Most panels these days use MC4 connectors. However, you need the controller in between the panels and the batteries.
What I would be inclined to do is use MC4 to get to the R-pod. What you use on the side of the R-pod would be optional, but if there is such a thing as a panel-mount for MC4, that would be a nice option.
I would then place the MPPT controller as close to the batteries/converter as possible. I'm guessing there is enough space behind the converter to make that a logical place, but that is a SWAG.
Some of our remote solar sites use as many as 5 37-volt panels. We run them in series, which produces ~~ 185 volts. Even in really crappy solar conditions (like heavy overcast), we can get > 60 volts out of this setup. Our solar sites are mostly 48 volt battery systems, and the MPPT controller converts from whatever voltage is coming out of the panels into what the batteries need.
I love MPPT controllers.