Check the water levels in the cells, if it is wet cell. Add distilled water if needed, don't overfill the cells.
Throw it on a good electronic charger now and leave it for a couple days. After it has charged, take it off the charger, and let it rest for a day.
Check the voltage, and use an battery PH tester to test the electrolyte. If the battery shows weakness, get a new one.
Your car charging system will not give you near a full charge. You would have to drive for days to get it near fully charged.
If all you're doing is runnig the water pump, your battery shouldn't need to be fully charged to run that intermittently for 3 days. The furnace, and the fridge (in 12V mode) , are big consumers of power. The water pump is 3rd place user, and the incandescent lamps, unless they are LED, which use near nothing for power.